A case of torture and violation of the right to fair trial in the Maybrat Regency provides an insight into the justice system. The seven indigenous Papuans were arrested and prosecuted for their alleged involvement in the attack on a military post in Kisor Village on 2 September 2021. The majority of the defendants were internally displaced shortly after the attack. Four were allegedly minors, but only one of them was tried under the juvenile justice system. Fourteen-year-old Lukas Ky was found guilty of murder and sentenced to eight years imprisonment.

Labour representatives have filed a complaint to the Papuan Representative Office of the National Human Rights Commission (Komnas HAM Papua) against their employer PT Tandan Sawita Papua (PT TSP) regarding unfair labour conditions.

Human rights defenders and media outlets reported the killing of two Papuan young men by members of the Indonesian military on 13 April 2020. According to relatives, Eden Armando Bebari and Ronny Wandik went at 8am to a river at Mile 34 inside the Freeport concession area to catch fish. In the evening, relatives looked for Eden and Ronny because they had not returned to their homes. Their relatives only found the motorcycles at Mile 34. Around 11.30 pm, rumors spread in the town of Timika that soldiers of the military mobile border security unit Gab YR 712 and YR 900 had shot dead two members of the West Papua National Liberation Army (TPN PB). The following day, the relatives were informed that the bodies of Eden and Ronny had been brought to the public hospital in Mimika.
More than two years later judges at the III-17 Military Court in Manado have found Lieutenant Gabriel Bowie Wijaya and Private Sugi Harnoto guilty of killing two Papuans in Timika.

Police officers dispersed civil unrest in the town of Enarotali, Panaiai Regency, using tear gas and live ammunition on 5 July 2022. The police justified the forceful intervention by claiming that protesters were damaging buildings at the Paniai Regent’s Office. A Papuan man named Donatus Nawipa was killed during the crowd control operation.

On 4 June 2022, a military member shot dead 16-year-old civilian, Rafael Ivan Balaweling in the Prafi District of Manokwari Regency, Papua Barat Province. The shooting occurred during a wedding ceremony in the Aimasi village. According to the military spokesperson, General Tatang Subarna, the shooting was triggered by an argument between Staff Sergeant AFTJ and Rafael Ivan Balaweling.

The Papuan Legal Aid Institute (LBH Papua) was subjected to an attack in the early morning of 9 May 2022. A motorcycle was set on fire inside the garage of the LBH Office in Jayapura City. LBH Papua is part of a coalition of human rights organisations in West Papua and provides legal and non-legal support to political activists and other victims of human rights violations.

Forty-one protesters were injured as police officers forcefully dispersed a peaceful demonstration against the formation of new Papuan autonomy regions in Jayapura on 10 May 2022. Shortly after, police officers arbitrarily arrested seven Papuan activists who partcipated in the demonstration. They were released on the same day.

Seven members of the military border security unit Yonif 711/RKS/Kampung Mosso tortured five Papuan students in the village of Mosso, Muara Tami District, Jayapura city on 6 May 2022. The students informed the military of their fishing activities. When they were done fishing, they went to the military post. They were ill-treated by military personnel for allegedly passing by other posts and not reporting their activities.